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@article{annurev,
  title={Multiscale simulation of soft matter: From scale bridging to adaptive resolution},
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  year={2008},
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@ARTICLE{jcp,
  author = {Praprotnik, M. and Delle Site, L. and Kremer, K.},
  title = {Adaptive resolution molecular-dynamics simulation: Changing the degrees of freedom on the fly},
  journal = {The Journal of Chemical Physics},
  year = {2005},
  volume = {123},
  pages = {224106},
  file = {praprotnik2005adaptive.pdf:praprotnik2005adaptive.pdf:PDF},
  timestamp = {2012.02.16}
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@ARTICLE{pre,
  author = {Praprotnik, M. and Delle Site, L. and Kremer, K.},
  title = {Adaptive resolution scheme for efficient hybrid atomistic-mesoscale
	molecular dynamics simulations of dense liquids},
  journal = {Physical Review E},
  year = {2006},
  volume = {73},
  pages = {066701},
  number = {6},
  file = {praprotnik2006adaptive.pdf:praprotnik2006adaptive.pdf:PDF},
  publisher = {APS},
  timestamp = {2012.02.16}
}

@article{presolo,
  title={Some fundamental problems for an energy-conserving adaptive-resolution molecular dynamics scheme},
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  journal={Physical Review E},
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  year={2007},
  publisher={APS}
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@article{prlcomm,
  title={Comment on “Adaptive Multiscale Molecular Dynamics of Macromolecular Fluids”},
  author={Praprotnik, M. and Poblete, S. and Delle Site, L. and Kremer, K.},
  journal={Physical Review Letters},
  volume={107},
  number={9},
  pages={99801},
  year={2011},
  publisher={APS}
}

@article{prlgc,
  title = {Adaptive resolution molecular dynamics simulation through coupling to an internal particle reservoir},
  author = {Fritsch, S. and Poblete, S. and Junghans, C. and Ciccotti, G. and Delle Site, L. and Kremer, K.},
  journal={Physical Review Letters},
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  year = {2012},
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  url = {http://link.aps.org/doi/10.1103/PhysRevLett.108.170602},
  publisher = {American Physical Society}
}

@article{rdfcorr,
  title = {{Adaptive Resolution Simulation (AdResS): A smooth thermodynamic and structural transition from atomistic to coarse grained resolution and vice versa in a Grand Canonical fashion}},
  author = {Wang, H. and Sch\"utte, C. and Delle Site, L.},
  journal={Journal of Chemical Theory and Computation},
  volume={8},
  number={8},
  pages={2878--2887},
  year = {2012}
}

@article{simon,
  title={Coupling different levels of resolution in molecular simulations},
  author={Poblete, S. and Praprotnik, M. and Kremer, K. and Delle Site, L.},
  journal={The Journal of Chemical Physics},
  volume={132},
  pages={114101},
  year={2010}
}

@article{ibm,
  title={Deriving effective mesoscale potentials from atomistic simulations},
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@article{han,
  title={Comparative atomistic and coarse-grained study of water: What do we lose by coarse-graining?},
  author={Wang, H. and Junghans, C. and Kremer, K.},
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  volume={28},
  number={2},
  pages={221--229},
  year={2009},
  publisher={Springer}
}

@article{debash,
  title={Kirkwood-Buff analysis of liquid mixtures in an open boundary simulation},
  author={Mukherji, D. and van der Vegt, N.F.A. and Kremer, K. and Delle Site, L.},
  journal={Journal of Chemical Theory and Computation},
  volume={8},
  number={2},
  pages={375--379},
  year={2012},
  publisher={ACS Publications}
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@article{jstatphyskurt,
  title={Statistical Physics Problems in Adaptive Resolution Computer Simulations of Complex Fluids},
  author={Praprotnik, M. and Poblete, S. and Kremer, K.},
  journal={Journal of Statistical Physics},
  volume={145},
  number={4},
  pages={946--966},
  year={2011},
  publisher={Springer}
}

@article{adolfo2,
  title={Adaptive resolution simulation of liquid para-hydrogen: testing the robustness of the quantum-classical adaptive coupling},
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  journal={Phys. Chem. Chem. Phys.},
  volume={13},
  number={22},
  pages={10510--10519},
  year={2011},
  publisher={The Royal Society of Chemistry}
}

@article{adolfo1,
  title={Classical to path-integral adaptive resolution in molecular simulation: towards a smooth quantum-classical coupling},
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  journal={Physical Review Letters},
  volume={104},
  number={25},
  pages={250201},
  year={2010},
  publisher={APS}
}

@article{potestio2012quantum,
  title={{Quantum locality and equilibrium properties in low-temperature parahydrogen: A multiscale simulation study}},
  author={Potestio, R. and Delle Site, L.},
  journal={Journal of Chemical Physics},
  volume={136},
  number={5},
  pages={54101},
  year={2012}
}


@ARTICLE{gromacs,
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  number = {3},
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@ARTICLE{praprotnik2007adaptive1,
  author = {Praprotnik, M. and Kremer, K. and Delle Site, L.},
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  publisher = {APS},
  timestamp = {2012.02.16}
}

@ARTICLE{praprotnik2007fractional,
  author = {Praprotnik, M. and Kremer, K. and Site, L.D.},
  title = {Fractional dimensions of phase space variables: a tool for varying
	the degrees of freedom of a system in a multiscale treatment},
  journal = {Journal of Physics A: Mathematical and Theoretical},
  year = {2007},
  volume = {40},
  pages = {F281},
  file = {praprotnik2007fractional.pdf:praprotnik2007fractional.pdf:PDF},
  publisher = {IOP Publishing},
  timestamp = {2011.10.05}
}

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@ARTICLE{junghans2010reference,
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@ARTICLE{praprotnik2005adaptive,
  author = {Praprotnik, M. and Delle Site, L. and Kremer, K.},
  title = {Adaptive resolution molecular-dynamics simulation: Changing the degrees
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  year = {2005},
  volume = {123},
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@ARTICLE{praprotnik2006adaptive,
  author = {Praprotnik, M. and Delle Site, L. and Kremer, K.},
  title = {Adaptive resolution scheme for efficient hybrid atomistic-mesoscale
	molecular dynamics simulations of dense liquids},
  journal = {Physical Review E},
  year = {2006},
  volume = {73},
  pages = {066701},
  number = {6},
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@ARTICLE{delgado2009coupling,
  author = {Delgado-Buscalioni, R. and Kremer, K. and Praprotnik, M.},
  title = {Coupling atomistic and continuum hydrodynamics through a mesoscopic
	model: Application to liquid water},
  journal = {The Journal of Chemical Physics},
  year = {2009},
  volume = {131},
  pages = {244107},
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  timestamp = {2011.09.20}
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@ARTICLE{matysiak2008modeling,
  author = {Matysiak, S. and Clementi, C. and Praprotnik, M. and Kremer, K. and
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  title = {Modeling diffusive dynamics in adaptive resolution simulation of
	liquid water},
  journal = {The Journal of chemical physics},
  year = {2008},
  volume = {128},
  pages = {024503},
  file = {matysiak2008modeling.pdf:matysiak2008modeling.pdf:PDF},
  timestamp = {2011.10.05}
}

@ARTICLE{lambeth2010communication,
  author = {Lambeth, B.P. and Junghans, C. and Kremer, K. and Clementi, C. and
	Site, L.D.},
  title = {Communication: On the locality of Hydrogen bond networks at hydrophobic
	interfaces},
  journal = {The Journal of chemical physics},
  year = {2010},
  volume = {133},
  pages = {221101},
  number = {22},
  file = {lambeth2010communication.pdf:lambeth2010communication.pdf:PDF},
  publisher = {American Institute of Physics},
  timestamp = {2012.02.16}
}

@ARTICLE{shaw2010atomic,
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	and Salmon, J.K. and Shan, Y. and Wriggers, W.},
  title = {Atomic-level characterization of the structural dynamics of proteins},
  journal = {Science},
  year = {2010},
  volume = {330},
  pages = {341},
  number = {6002},
  file = {shaw2010atomic.pdf:shaw2010atomic.pdf:PDF;supporting material:shaw2010atomic.supporting.pdf:PDF},
  publisher = {American Association for the Advancement of Science},
  timestamp = {2012.02.16}
}


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@ARTICLE{peter2008classical,
  author = {Peter, C. and Delle Site, L. and Kremer, K.},
  title = {Classical simulations from the atomistic to the mesoscale and back:
	coarse graining an azobenzene liquid crystal},
  journal = {Soft Matter},
  year = {2008},
  volume = {4},
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  timestamp = {2012.02.16}
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@ARTICLE{peter2009multiscale,
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  publisher = {The Royal Society of Chemistry},
  timestamp = {2012.02.16}
}                  


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@article{poblete2010coupling,
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@article{fritsch2011grand,
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